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11 FRED DEMO

Title
FRED DEMO
Period
2018-10-02 till 2018-10-17
Period length
15 days
Sampling interval
27 days Irregular Interval
Description

This data package is just demo package for all FRED features.

It contains just examples!

In a data package, you can store your data and metadata files with a simple upload.
With web forms you can enter your metadata like the study side or keyswords for the data.
You can easily manage access to your data with a mouse click, assign a license and start a DOI.

If you has any questions about FRED, or data management just write an e-mail to fred@igb-berlin.de

You may try the Resolver at  http://www.doi.org/ to see how the doi service works for example.

You want to learn more about Data Management at IGB? Checkout our Intranet at: https://intranet.igb-berlin.de/display/datamanagement

 

 

 

 

 

 

Species Groups
Study site
Fuchskuhle
Sampling types
Phytoplankton, Zooplankton, surface water, groundwater
Sampling locations
Transekt
location
53.127784, 12.958199
location
Moor an der Großen Fuchskuhle
location
53.104955, 12.983628
location
Parameters

physics:

secchi depth
name
secchi depth
description

synonyms
Sichttiefe, Transparancy
water level
name
water level
synonyms
level, Pegel

chemistry:

Cl, chloride
name
Cl, chloride
description

0,2µm filtrated, Ionenchromatographie (IC)

synonyms
Chlorid
C, TIC (total inorganic carbon)
name
C, TIC (total inorganic carbon)
description
nondispersive infrared sensor  (NDIR) after purging with hydrochloric acid
synonyms
Gesamter anorganischer Kohlenstoff, TIC
Fe, (total dissolved iron)
name
Fe, (total dissolved iron)
description

Determination of Fe (TDi) by flame AAS or inductively coupled plasma optical emission spectrometry (ICP-OES) after digestion

synonyms
gelöstes Gesamteisen
F, fluoride
name
F, fluoride
N, nitrate-nitrogen
name
N, nitrate-nitrogen
description

0,45µm filtrated, photometric determination

synonyms
NO3-N, NO3--N, nitrate, Nitrat
N, total dissolved nitrogen
name
N, total dissolved nitrogen
description

0,45µm filtrated, nondispersive infrared sensor  (NDIR) after combustion

synonyms
Stickstoff gelöst, gesamter gelöster Stickstoff, DN
P, (total dissolved phosphorus)
name
P, (total dissolved phosphorus)
description

0,45µm filtrated, photometric determination after digestion

 

synonyms
Gesamter gelöster Phosphor
P, (total phosphorus)
name
P, (total phosphorus)
description

photometric determination after digestion

synonyms
total phosphorus, gesamter Phosphor

biology:

chlorophyll a
name
chlorophyll a
description

Attention: There are two different methods:

HPLC - High Performance Liquid Chromatography (ex situ)

YSI - Chlorophyll Sensor in Multiparameter probe (in situ)

synonyms
Chlorophyllkonzentration, alpha-chlorophyll
escherichia coli
name
escherichia coli
synonyms
E. coli
phycocyanin
name
phycocyanin
description

A measurement of Blue algae concentration.

Unit RFU: relative fluorescence units.
production
name
production

meteorology:

air temperature
name
air temperature
synonyms
Lufttemperatur
relative humidity
name
relative humidity
description

Rel. humidity of air in percent.

synonyms
relative Luftfeuchtigkeit
wind speed
name
wind speed
synonyms
Windgeschwindigkeit, Windstärke

astronomy:

azimuth
name
azimuth
sunrise
name
sunrise

geodesy:

elevation
name
elevation

functional group:

functional group
name
functional group
GeoNode references

GeoNode documents

  • Network of Water Bodies Catchments

GeoNode layers

  • WMO Basins and Sub-Basins, 3rd ed. (GRDC, 2020)
  • Countries, 2020 - Administrative Units - Dataset
  • fish_change_SSP5_2070_endemic
Contact
FRED IGB, Simone Frenzel
Licence for data
All rights reserved. Please send a request to FRED IGB, Simone Frenzel if you like to use this data. Mind our data policy: IGB Data Policy
Project
Fred Demo Project Website
Current doi
10.18728/igb-fred-569.5

Metadata files

TitleUpload dateFiletypeLicenceActions
Fred_Demo_Example_Metadata_file.pdf22. Jul. 2019 07:29.pdfODC-By Download

Data Series

TitleActions
Demo_Example_DataSet Details Download

Data files (e.g. excel)

TitlecreatedFiletypeActions
share.pdf 01. Nov. 2023 04:14 datatable: .pdf
Error: To access file, please get in touch with the contact person.
example.txt 01. Nov. 2023 04:14 datatable: .txt
Error: To access file, please get in touch with the contact person.
testsize.zip 24. Feb. 2021 09:42 datatable: .zip
Error: To access file, please get in touch with the contact person.
Demo_Example_DataSet.ods 18. Jul. 2019 09:30 datatable: .ods
Error: To access file, please get in touch with the contact person.
symbols_only_short.ods 03. Dec. 2018 14:46 datatable: .ods
Error: To access file, please get in touch with the contact person.

Machine Readable Metadata Files

FRED provides all metadata of this package in a maschine readable format. There is a pure XML file and one EML file in Ecological Metadata Language. Both files are published under the freeODC-ByLicence.

  • FRED_DEMO.xml
  • FRED_DEMO.eml

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Parsing data File

Estimated Time:

Why does it take so much time?

While parsing a file, the database has to perform various tasks, some of them needs a lot of CPU and memory for larger files.

  • preprocessing: means automatic detection of headlines, table body, format values or csv-separators
  • copying: means read the file cell by cell and copy all elements to the database. During this format settings can be calculated (for example iso-time)
  • analyzing: check out for different data types (can be time, numeric or text)